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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25561029_25563033_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25561029 - 25563033
Intron Length:
2005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
ESHQFQAKNFWNGRWRSEWK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.3
0.7
1
82.7
32.1
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
CAPZA2
Ensembl Gene ID:
ENSAPLG00000021156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046835
25553754 - 25582551
28798