Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25563114_25564795_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25563114 - 25564795

Intron Length:

1682

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

ATTTCTAATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTTCTTTCATT

Flanking Amino Acid:

KEHYPNGVCTVYGKTIDGQQ

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

78.5

35.5

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

66.3

0.37

1.1

70.2

38.9

Minor 5ss

40.6

-1.1

2.8

58.6

39.3

Minor BPS

67.7

0.64

1.7

82.98

39.3

Associated Gene:

Gene:

CAPZA2

Ensembl Gene ID:

ENSAPLG00000021156

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046835

25553754 - 25582551

28798