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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25565003_25565511_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25565003 - 25565511
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AAATTTCTAACA
Flanking Amino Acid:
PVKIDGYDEQVLITEHGDLG
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.3
0.5
1
66.7
37.8
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
55.3
0.16
1.6
64.31
35.4

Associated Gene:

Gene:
CAPZA2
Ensembl Gene ID:
ENSAPLG00000021156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046835
25553754 - 25582551
28798