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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25566271_25568236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25566271 - 25568236
Intron Length:
1966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTATTATAAACA
Flanking Amino Acid:
PPGEFNEVFNDVRLLLNNDN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.1
0.65
0.8
76.6
31.6
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
51.3
0.04
1.9
65.92
40.1

Associated Gene:

Gene:
CAPZA2
Ensembl Gene ID:
ENSAPLG00000021156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046835
25553754 - 25582551
28798