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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25608365_25608513_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25608365 - 25608513
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
ATTTGAATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATTTCATAACT
Flanking Amino Acid:
LLQPEYCPDPLYEVMLKCWH
Intron Amino Acid Position:
1313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
65.5
0.35
1.1
60.1
44.5
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
69.9
0.7
1.6
84.62
35.1

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873