About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25608651_25609539_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25608651 - 25609539
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATGTAC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
TQKFTTKSDVWSFGVLLWEL
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.6
35.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
37.2
-1.4
3.3
46.7
43.5
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873