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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25609706_25612218_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25609706 - 25612218
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTCAATTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTTTTGTCAATT
Flanking Amino Acid:
VHRDLAARNCMLDEKFTVKV
Intron Amino Acid Position:
1212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
72
0.5
1
61.9
44.1
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
57.5
0.31
2.2
83.48
38.1

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873