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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25612329_25613894_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25612329 - 25613894
Intron Length:
1566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTATATTTTACA
Flanking Amino Acid:
LRNFIRNETHNPTVKDLIGF
Intron Amino Acid Position:
1176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77.4
37.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.8
0.81
0.8
80.3
36.7
Minor 5ss
38.5
-1.3
2.7
48.6
40.2
Minor BPS
58.9
0.27
1.8
73.05
38.3

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873