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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25614077_25614741_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25614077 - 25614741
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
CTGGATTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTGTTTAATT
Flanking Amino Acid:
KIHCAVKSLNRITDLEEVAQ
Intron Amino Acid Position:
1115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
71.8
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.1
0.5
1
68.8
41.7
Minor 5ss
35.9
-1.6
2.9
41.6
40.4
Minor BPS
70.3
0.72
1.7
85.82
34.8

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873