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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25617468_25619367_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25617468 - 25619367
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATCTC
5'SS Class:
major
3'SS Sequence:
GTTCATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTTGTTCATCT
Flanking Amino Acid:
SVDYRSTFLEDQFPSMSQNG
Intron Amino Acid Position:
1011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.7
41.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
80.2
0.68
0.9
73.4
36.7
Minor 5ss
37.1
-1.5
3.3
52.9
44.2
Minor BPS
51
0.11
2.2
79.81
42.6

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873