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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25620460_25622470_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25620460 - 25622470
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
CTATCTACATTT
Flanking Amino Acid:
LKSNSELNIEWKQEVLSTVI
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
43.9
-0.3
1.9
61.66
42.7

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873