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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25629720_25638525_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25629720 - 25638525
Intron Length:
8806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
ACTTACTTACTC
Flanking Amino Acid:
VPKLGMNFSVACSHRSSSEI
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
88
0.85
0.6
84.1
24.1
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
55.4
0.15
1.8
65.37
40.6

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873