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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25639651_25642130_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25639651 - 25642130
Intron Length:
2480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TCTGTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
CAGTGCTGACAA
Flanking Amino Acid:
FVGEKPCILKSISASTVECY
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
82.4
0.73
0.8
73.4
37.1
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
40.4
-0.7
2.1
46.32
42.9

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873