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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25642268_25642511_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25642268 - 25642511
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTACTC
Flanking Amino Acid:
KTLFNTFSYVNPIITSISPT
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.6
0.6
0.8
74.1
30.7
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
60.2
0.3
1.6
68.78
38

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873