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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25642615_25643839_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25642615 - 25643839
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
TTCTTTCCAAAG
Flanking Amino Acid:
ALEAKSSNKNKLECTVPAAK
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
76.3
0.59
1
78.4
27.7
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
44.5
-0.5
1.9
52.89
42

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873