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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25644001_25649204_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25644001 - 25649204
Intron Length:
5204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
QETCLPRVYEILPSSAPLEG
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
70
0.5
1
59.3
39.1
Major PPT
84.1
0.77
0.9
81
35.4
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873