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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25650923_25662515_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25650923 - 25662515
Intron Length:
11593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
CTATCTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAATT
Flanking Amino Acid:
LGTSEGRFMQIVVSRSEPTA
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.5
0.6
0.8
72.2
32.3
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
73.9
0.83
1.3
86.99
32

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873