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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25662708_25676808_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25662708 - 25676808
Intron Length:
14101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CATTTTCTAACA
Flanking Amino Acid:
GKDSKYCLNRAFSRNASYCR
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
34.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78
0.63
0.9
73.6
35.4
Minor 5ss
32.5
-2
3.1
35.2
41.4
Minor BPS
58.6
0.27
1.7
68.47
38

Associated Gene:

Gene:
MET
Ensembl Gene ID:
ENSAPLG00000010894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011473
25608151 - 25678023
69873