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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25772730_25780276_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25772730 - 25780276
Intron Length:
7547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGCTCTTTTACA
Flanking Amino Acid:
VFAALSCLHVWVVVPFVRTC
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85
0.79
0.8
79.3
32.7
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
64.8
0.46
1.6
71.82
40.2

Associated Gene:

Gene:
CAV2
Ensembl Gene ID:
ENSAPLG00000026342
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044643
25772579 - 25780711
8133