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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25780465_25780564_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25780465 - 25780564
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
AGCGGCTGACGG
Flanking Amino Acid:
DPHGLNAHLQLGFEDVIAEP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
88.2
0.86
0.7
80.6
31.5
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
33.3
-1.4
2.1
30.49
41.3

Associated Gene:

Gene:
CAV2
Ensembl Gene ID:
ENSAPLG00000026342
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044643
25772579 - 25780711
8133