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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2584247_2584765_R

Intron Information:

Intron Rank:
147536
Intron Class:
major
Intron Phase:
Intron Coordinates:
2584247 - 2584765
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
CTTCTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAGATATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81
0.7
0.7
73
31.9
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
53.2
0.08
1.6
61.13
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026736
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029178
2581165 - 2585140
3976