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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2584247_2586109_R

Intron Information:

Intron Rank:
147533
Intron Class:
major
Intron Phase:
Intron Coordinates:
2584247 - 2586109
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAGATATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81
0.7
0.7
73
31.9
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
53.2
0.08
1.6
61.13
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026736
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019622
2581165 - 2586272
5108