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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25866048_25871107_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25866048 - 25871107
Intron Length:
5060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCGTGGTGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
VEGMVFCSVECSQQPPDVLQ
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
53.7
0.08
1.2
54.7
44
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
TES
Ensembl Gene ID:
ENSAPLG00000012062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012572
25865447 - 25897799
32353