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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25878335_25885568_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25878335 - 25885568
Intron Length:
7234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAATT
Flanking Amino Acid:
KCEGFELHFWRKICRNCKCG
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.5
0.57
1
71.5
42.8
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
55.7
0.26
2.3
82.74
39.5

Associated Gene:

Gene:
TES
Ensembl Gene ID:
ENSAPLG00000012062
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012572
25865447 - 25897799
32353
ENSAPLT00000027051
25869726 - 25898607
28882