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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25918709_25962952_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25918709 - 25962952
Intron Length:
44244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
GTGTGTTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTGTTTTATAG
Flanking Amino Acid:
MPQSDFFSSANSG
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.9
0.56
0.9
68.8
42.1
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
46.6
-0.4
1.8
52.35
42.7

Associated Gene:

Gene:
TFEC
Ensembl Gene ID:
ENSAPLG00000012143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038296
25918698 - 26060532
141835
ENSAPLT00000012647
25918698 - 26060532
141835