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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_25963200_26024643_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25963200 - 26024643
Intron Length:
61444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTATA
5'SS Class:
major
3'SS Sequence:
CATTTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ACAGCTTGAAAC
Flanking Amino Acid:
SSDKAPAISEVQTHLENQSR
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
78.2
38.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.9
0.63
0.8
69.7
36.4
Minor 5ss
43.8
-0.7
2.9
60.1
44.3
Minor BPS
47.2
-0.2
1.6
51.59
39.2

Associated Gene:

Gene:
TFEC
Ensembl Gene ID:
ENSAPLG00000012143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029953
25921390 - 26060649
139260
ENSAPLT00000018822
25926584 - 26060532
133949
ENSAPLT00000012647
25918698 - 26060532
141835
ENSAPLT00000038296
25918698 - 26060532
141835