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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26024896_26027253_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26024896 - 26027253
Intron Length:
2358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
ATTATTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGGTCTTAAAA
Flanking Amino Acid:
LALGGDHENAMEEVIEDIIN
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
51.7
46.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.4
0.53
1
67.6
42.9
Minor 5ss
29.2
-2.4
3.5
38.2
46.8
Minor BPS
64.9
0.46
1.5
71.86
40.4

Associated Gene:

Gene:
TFEC
Ensembl Gene ID:
ENSAPLG00000012143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029953
25921390 - 26060649
139260
ENSAPLT00000018822
25926584 - 26060532
133949
ENSAPLT00000012647
25918698 - 26060532
141835