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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26050928_26059120_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26050928 - 26059120
Intron Length:
8193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTTCA
5'SS Class:
major
3'SS Sequence:
CTACATTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTATCTCTACAT
Flanking Amino Acid:
LGTLIPKSNDPDMRWNKGTI
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
65
37.4
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
75.7
0.58
0.9
69.4
36.3
Minor 5ss
36.9
-1.5
2.8
46.2
42.2
Minor BPS
49.6
0.05
2
74.83
41.7

Associated Gene:

Gene:
TFEC
Ensembl Gene ID:
ENSAPLG00000012143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038296
25918698 - 26060532
141835
ENSAPLT00000029953
25921390 - 26060649
139260
ENSAPLT00000018822
25926584 - 26060532
133949
ENSAPLT00000012647
25918698 - 26060532
141835