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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26059269_26060151_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26059269 - 26060151
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
TTTTAAACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTAAAC
Flanking Amino Acid:
ANRRLLLRIQELEIQARAHG
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.2
0.39
1
66
39.5
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
TFEC
Ensembl Gene ID:
ENSAPLG00000012143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038296
25918698 - 26060532
141835
ENSAPLT00000029953
25921390 - 26060649
139260
ENSAPLT00000018822
25926584 - 26060532
133949
ENSAPLT00000012647
25918698 - 26060532
141835