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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26162955_26196943_R

Intron Information:

Intron Rank:
144367
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
26162955 - 26196943
Intron Length:
33989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGAAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
57.8
0.18
1.1
49.7
46.7
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
66.3
0.59
1.4
75.95
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019584
26162532 - 26197266
34735