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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26186125_26196943_R

Intron Information:

Intron Rank:
144368
Intron Class:
major
Intron Phase:
Intron Coordinates:
26186125 - 26196943
Intron Length:
10819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTATAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72
0.5
1.1
77.9
34.5
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
68.1
0.65
1.6
84.1
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029015
26185773 - 26197266
11494