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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26191577_26196943_R

Intron Information:

Intron Rank:
144366
Intron Class:
major
Intron Phase:
Intron Coordinates:
26191577 - 26196943
Intron Length:
5367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
CTCTCTAAATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
75
0.56
0.8
73.3
31.7
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
42.7
-0.4
2
59.57
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017520
26191170 - 26197266
6097