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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26197185_26243594_R

Intron Information:

Intron Rank:
144369
Intron Class:
major
Intron Phase:
Intron Coordinates:
26197185 - 26243594
Intron Length:
46410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTGCTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.2
0.7
0.8
78.1
34.3
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
72.3
0.78
1.5
88.65
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024942
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041657
26196924 - 26247521
50598