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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26215827_26218010_R

Intron Information:

Intron Rank:
134970
Intron Class:
major
Intron Phase:
Intron Coordinates:
26215827 - 26218010
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.8
35.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37
-1.5
2.8
43.2
43.9
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019965
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044186
26215483 - 26224347
8865