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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26222361_26232230_F

Intron Information:

Intron Rank:
141054
Intron Class:
major
Intron Phase:
Intron Coordinates:
26222361 - 26232230
Intron Length:
9870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
ATTTCCCTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
54
0.1
1
59.7
32.6
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
69.2
0.69
1.6
86.39
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033641
26222269 - 26232333
10065