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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2623820_2651586_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2623820 - 2651586
Intron Length:
27767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
CAAAGTTTATCT
Flanking Amino Acid:
LLLLLLLLLHDVSSDDVPGT
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
75.9
0.58
0.8
69.4
36.9
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
45
-0.3
2
58.32
44.6

Associated Gene:

Gene:
PODXL
Ensembl Gene ID:
ENSAPLG00000003276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041358
2622884 - 2663876
40993
ENSAPLT00000020062
2622884 - 2663876
40993