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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26248610_26276787_F

Intron Information:

Intron Rank:
125037
Intron Class:
major
Intron Phase:
Intron Coordinates:
26248610 - 26276787
Intron Length:
28178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTTTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.4
28.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
77.3
35.9
Minor 5ss
32.6
-2
3.1
39.4
46.5
Minor BPS
60.7
0.33
1.4
69
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017343
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033356
26247765 - 26277021
29257