Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26442388_26451089_F

Intron Information:

Intron Rank:

127728

Intron Class:

major

Intron Phase:

Intron Coordinates:

26442388 - 26451089

Intron Length:

8702

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTCTGTACA

5'SS Class:

major

3'SS Sequence:

CTGTTATTTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TGTTATTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.4

0.34

1.3

64.2

41.8

Major BPS

0.3

62.3

30.4

Major PPT

0.47

1.1

71.1

37.9

Minor 5ss

37.1

-1.5

2.4

35.5

40.6

Minor BPS

60.6

0.2

1.7

66.63

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018862

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048395

26426311 - 26456868

30558