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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26451171_26460070_F

Intron Information:

Intron Rank:
127726
Intron Class:
major
Intron Phase:
Intron Coordinates:
26451171 - 26460070
Intron Length:
8900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GCTTAATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77.9
0.63
0.9
72.7
37.4
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
50.9
0.11
1.9
72.41
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048116
26451060 - 26460075
9016