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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2646862_2651586_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2646862 - 2651586
Intron Length:
4725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
CAAAGTTTATCT
Flanking Amino Acid:
MQPGRSRTDVSSDDVPGT
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
75.9
0.58
0.8
69.4
36.9
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
45
-0.3
2
58.32
44.6

Associated Gene:

Gene:
PODXL
Ensembl Gene ID:
ENSAPLG00000003276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003337
2646837 - 2663876
17040