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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2652418_2654203_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2652418 - 2654203

Intron Length:

1786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAGAA

5'SS Class:

major

3'SS Sequence:

GTTGGGGACCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGTGTAT

U12 Branch Point Sequence:

TTTTGGTGTATG

Flanking Amino Acid:

DVATTTTPRADRTSQGLVPD

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

71.3

34.5

Major BPS

45.5

-0.2

1.6

43.1

49.2

Major PPT

53.9

0.09

1.1

42.8

46.7

Minor 5ss

35.3

-1.7

3.4

46.9

48.4

Minor BPS

-0.9

2.7

55.68

45.8

Associated Gene:

Gene:

PODXL

Ensembl Gene ID:

ENSAPLG00000003276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041358

2622884 - 2663876

40993

ENSAPLT00000020062

2622884 - 2663876

40993

ENSAPLT00000003337

2646837 - 2663876

17040