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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26537840_26548618_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26537840 - 26548618
Intron Length:
10779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATACCCTCAAAT
Flanking Amino Acid:
ESSALISLPREKTDQQNPAA
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
70.7
0.47
0.9
70
35.5
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
59.3
0.37
1.7
75.32
40.3

Associated Gene:

Gene:
MDFIC
Ensembl Gene ID:
ENSAPLG00000012299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012797
26502949 - 26548774
45826