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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2654353_2654983_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2654353 - 2654983
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
AACAGTTTGACA
Flanking Amino Acid:
QHPNISFKNEIVCKDQIQDT
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.2
35.8
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
82.3
0.73
0.9
73.4
41.9
Minor 5ss
32.6
-2
3.1
41.2
44.8
Minor BPS
47.3
-0.2
1.8
53.69
38.8

Associated Gene:

Gene:
PODXL
Ensembl Gene ID:
ENSAPLG00000003276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041358
2622884 - 2663876
40993
ENSAPLT00000020062
2622884 - 2663876
40993
ENSAPLT00000003337
2646837 - 2663876
17040