Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26577092_26583184_F

Intron Information:

Intron Rank:

143294

Intron Class:

major

Intron Phase:

Intron Coordinates:

26577092 - 26583184

Intron Length:

6093

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAAGAA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAC

U12 Branch Point Sequence:

ATCACCGTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

64.8

35.1

Major BPS

69.5

0.49

71.8

33.3

Major PPT

94.8

1.01

0.5

92.6

17.3

Minor 5ss

-2.5

3.5

37.9

46.9

Minor BPS

60.1

0.39

2.1

79.06

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027189

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018030

26576886 - 26585901

9016