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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2660238_2660954_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2660238 - 2660954

Intron Length:

717

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

TGCCTTCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

CTCACTGCAGCT

Flanking Amino Acid:

QRWAVHAVVHRLLQPEDVFE

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.6

0.37

1.3

63.5

42.9

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

73.8

0.54

0.8

65.4

36.2

Minor 5ss

32.7

-2

3.3

44.7

43.5

Minor BPS

39.6

-0.7

2.2

56.21

46.4

Associated Gene:

Gene:

PODXL

Ensembl Gene ID:

ENSAPLG00000003276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003337

2646837 - 2663876

17040

ENSAPLT00000041358

2622884 - 2663876

40993

ENSAPLT00000020062

2622884 - 2663876

40993