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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2661017_2661116_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2661017 - 2661116
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGATCCTGACCC
Flanking Amino Acid:
LKEKRNELEKLGIVNVTYLN
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
78.1
0.63
0.7
72.2
26
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
52.7
0.06
1.8
62.26
42.3

Associated Gene:

Gene:
PODXL
Ensembl Gene ID:
ENSAPLG00000003276
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041358
2622884 - 2663876
40993
ENSAPLT00000020062
2622884 - 2663876
40993
ENSAPLT00000003337
2646837 - 2663876
17040