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Intron Name: Anas_platyrhynchos_platyrhynchos_1_2661285_2661912_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2661285 - 2661912

Intron Length:

628

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

TGGAAATAAGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TGTTGTTTCACC

Flanking Amino Acid:

HQRFSQKKNQHIHPDLPGFD

Intron Amino Acid Position:

485

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

51.9

0.04

1.1

45.3

44.7

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

53.2

0.08

2.2

70.5

41.3

Associated Gene:

Gene:

PODXL

Ensembl Gene ID:

ENSAPLG00000003276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041358

2622884 - 2663876

40993

ENSAPLT00000003337

2646837 - 2663876

17040