Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_2661970_2663234_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2661970 - 2663234

Intron Length:

1265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTGAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCGCAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTATTT

Flanking Amino Acid:

DDGRAILIFNRLTEELQTME

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

78.4

25.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

70.6

0.46

0.9

66.4

34.3

Minor 5ss

36.5

-1.5

2.9

44.6

43.6

Minor BPS

62.5

0.47

1.8

84.55

36.3

Associated Gene:

Gene:

PODXL

Ensembl Gene ID:

ENSAPLG00000003276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041358

2622884 - 2663876

40993

ENSAPLT00000003337

2646837 - 2663876

17040