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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26674728_26675563_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26674728 - 26675563
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTCATT
Flanking Amino Acid:
YGAALNASLQAALAESSLPL
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.7
0.47
1
65.9
40.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
67.3
0.62
1.7
84.08
37.1

Associated Gene:

Gene:
FOXP2
Ensembl Gene ID:
ENSAPLG00000012306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012842
26651490 - 26708533
57044