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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_26675634_26676939_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26675634 - 26676939
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTTGG
5'SS Class:
major
3'SS Sequence:
CGTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAC
Flanking Amino Acid:
YQKRRSQKITGSPTLVKNIP
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
60.8
46.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.1
0.77
0.8
81.1
35.5
Minor 5ss
38.1
-1.3
3
40.6
45.6
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
FOXP2
Ensembl Gene ID:
ENSAPLG00000012306
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012842
26651490 - 26708533
57044